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Okasha, Samir. Experiment, observation and the confirmation of laws
2011, Analysis 71(2): 222-232.

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Added by: Laura Jimenez

Summary: It is customary to distinguish experimental from purely observational sciences. The former include physics and molecular biology, the latter astronomy and palaeontology. Surprisingly, mainstream philosophy of science has had rather little to say about the observational/experimental distinction. For example, discussions of confirmation usually invoke a notion of 'evidence', to be contrasted with 'theory' or 'hypothesis'; the aim is to understand how the evidence bears on the hypothesis. But whether this 'evidence' comes from observation or experiment generally plays no role in the discussion; this is true of both traditional and modern confirmation theories, Bayesian and non-Bayesian. In this article, the author sketches one possible explanation, by suggesting that observation and experiment will often differ in their confirmatory power. Based on a simple Bayesian analysis of confirmation, Okasha argues that universal generalizations (or 'laws') are typically easier to confirm by experimental intervention than by pure observation. This is not to say that observational confirmation of a law is impossible, which would be flatly untrue. But there is a general reason why confirmation will accrue more easily from experimental data, based on a simple though oft-neglected feature of Bayesian conditionalization.

Comment: Previous knowledge of Bayesian conditioning might be needed. The article is suitable for postgraduate courses in philosophy of science focusing in the distinction between observational and experimental science.

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Okruhlik, Kathleen. Gender and the Biological Sciences
1994, Canadian Journal of Philosophy 24(sup1): 21-42.

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Added by: Nick Novelli

Summary: Okhrulik offers a feminist critique of biology, a "real" science, to show that it is not just the "soft" social sciences that are affected by bias. She argues that preconceptions can interfere not only in cases of "bad science", but even when the rules of scientific practice are followed. There is no safeguard against the effects of bias in the context of discovery. Even if theories are rigorously tested to remove bias, some theories might not even be generated and so would not get to the point of being counted as competitors in the testing stage. This is illustrated by a number of case studies. Okhrulik concludes that a diversity of viewpoints is crucial.

Comment: Presents a good case for why feminist critiques are relevant even to "harder" sciences, made more salient with easy-to-understand examples. Raises issues of theory-ladenness of observation and underdetermination of theory. A good introduction to reasons to doubt that science is completely "objective".

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Parker, Wendy. Model Evaluation: An Adequacy-for-Purpose View
2020, Philosophy of Science 87 (3):457-477

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Added by: Simon Fokt

Abstract: According to an adequacy-for-purpose view, models should be assessed with respect to their adequacy or fitness for particular purposes. Such a view has been advocated by scientists and philosophers alike. Important details, however, have yet to be spelled out. This article attempts to make progress by addressing three key questions: What does it mean for a model to be adequate-for-purpose? What makes a model adequate-for-purpose? How does assessing a model’s adequacy-for-purpose differ from assessing its representational accuracy? In addition, responses are given to some objections that might be raised against an adequacy-for-purpose view.

Comment: A good overview (and a defence) of the adequacy-for-purpose view on models. Makes the case that models should be assessed with respect to their adequacy for particular purposes.

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Plutynski, Anya. The rise and fall of the adaptive landscape?
2008, Biology and Philosophy 23 (5):605-623.

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Added by: Chris Blake-Turner, Contributed by: Anya Plutynski

Abstract: The discussion of the adaptive landscape in the philosophical literature appears to be divided along the following lines. On the one hand, some claim that the adaptive landscape is either 'uninterpretable' or incoherent. On the other hand, some argue that the adaptive landscape has been an important heuristic, or tool in the service of explaining, as well as proposing and testing hypotheses about evolutionary change. This paper attempts to reconcile these two views.

Comment: I use this in my philosophy of biology class to discuss the use of metaphor and analogy in science.

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Richardson, S. Sarah. Sex Itself: The Search for Male and Female in the Human Genome
2013, The University of Chicago Press.

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Added by: Andrea Blomqvist, Contributed by: Isela

Publisher's Note: Human genomes are 99.9 percent identical—with one prominent exception. Instead of a matching pair of X chromosomes, men carry a single X, coupled with a tiny chromosome called the Y. Tracking the emergence of a new and distinctive way of thinking about sex represented by the unalterable, simple, and visually compelling binary of the X and Y chromosomes, Sex Itself examines the interaction between cultural gender norms and genetic theories of sex from the beginning of the twentieth century to the present, postgenomic age. Using methods from history, philosophy, and gender studies of science, Sarah S. Richardson uncovers how gender has helped to shape the research practices, questions asked, theories and models, and descriptive language used in sex chromosome research. From the earliest theories of chromosomal sex determination, to the mid-century hypothesis of the aggressive XYY supermale, to the debate about Y chromosome degeneration, to the recent claim that male and female genomes are more different than those of humans and chimpanzees, Richardson shows how cultural gender conceptions influence the genetic science of sex. Richardson shows how sexual science of the past continues to resonate, in ways both subtle and explicit, in contemporary research on the genetics of sex and gender. With the completion of the Human Genome Project, genes and chromosomes are moving to the center of the biology of sex. Sex Itself offers a compelling argument for the importance of ongoing critical dialogue on how cultural conceptions of gender operate within the science of sex.

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Sarukkai, Sundar. What is science?
2012, National Book Trust, India.

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Added by: Laura Jimenez

Summary: This book serves as an excellent introduction to Indian philosophy from the standpoint of the Nyãya-Vaisesika worldview. The book is divided into six chapters: (i) Introduction; (ii) Doubt (including sections like "Types of Doubt" and "Limits of Doubt"); (iii) Indian Logic (in which Dignaga, Dharmakïrti, and a "Summary of Themes in Indian Logic Relevant to Philosophy of Science" are discussed); (iv) Logic in Science: The Western Way (dealing, among other things, with induction, deduction, and laws and counterfactuals); (v) Science in Logic: The Indian Way? ; and (vi) Knowledge, Truth and Language (including sections with titles like the Pramäna Theory, Truth in Western and Indian Philosophies and Science, Effability, and Bhartrhai).

Comment: The book is recommendable, not only as an introduction to significant and basic themes in Indian philosophy, but also for insightful details in explaining several complex ideas in science and philosophy and for a clear explication of the Indian contribution to discussions on them. Could be suitable for both undergratuates and postgraduates.

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Schrader-Frechette, Kristin. Individualism, Holism, and Environmental Ethics
1996, Ethics and the Environment, 1 (1): 55-69.

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Added by: Rochelle DuFord

Abstract: Neoclassical economists have been telling us for years that if we behave in egoistic, individualistic ways, the invisible hand of the market will guide us to efficient and sustainable futures. Many contemporary Greens also have been assuring us that if we behave in holistic ways, the invisible hand of ecology will guide us to health and sustainable futures. This essay argues that neither individualism nor holism will provide environmental sustainability. There is no invisible hand, either in economics or in ecology. Humans have no guaranteed tenure in the biosphere. Likewise there is no philosophical quick fix for environmental problems, either through the ethical individualism of Feinberg, Frankena, and Regan, or through the ecological holism of Callicott and Leopold. The correct path is more complex and tortuous than either of these ways. The essay argues that the best way to reach a sustainable environmental future probably is through a middle path best described as "hierarchical holism.".

Comment: This text intervenes in the debate over holism and individualism in environmental ethics--specifically, as it concerns questions of environmental protection and conservation. It would fit well in a course on environmental ethics that discusses questions of either the metaphysics of nature or the nature of value.

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Series, Peggy, Mark Sprevak. From Intelligent machines to the human brain
2014, in M. Massimi (ed.), Philosophy and the Sciences for Everyone. Routledge

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Added by: Laura Jimenez

Summary: How does one make a clever adaptive machine that can recognise speech, control an aircraft, and detect credit card fraud? Recent years have seen a revolution in the kinds of tasks computers can do. Underlying these advances is the burgeoning field of machine learning and computational neuroscience. The same methods that allow us to make clever machines also appear to hold the key to understanding ourselves: to explaining how our brain and mind work. This chapter explores this exciting new field and some of the philosophical questions that it raises.

Comment: Really good chapter that could serve to introduce scientific ideas behind the mind-computer analogy. The chapter zooms in on the actual functioning of the human mind as a computer able to perform computations. Recommendable for undergraduate students in Philosophy of Mind or Philosophy of science courses.

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Shrader-Frechette, Kristine. Tainted: How Philosophy of Science can expose bad science
2014, Oxford University Press USA.

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Added by: Laura Jimenez

Abstract: Lawyers often work pro bono to liberate death-row inmates from flawed legal verdicts that otherwise would kill them. This is the first book on practical philosophy of science, how to practically evaluate scientific findings with life-and-death consequences. Showing how to uncover scores of scientific flaws - typically used by special interests who try to justify their pollution - this book aims to liberate many potential victims of environmentally induced disease and death.It shows how citizens can help uncover flawed science and thus liberate people from science-related societal harms such as pesticides, waste dumps, and nuclear power. It shows how flawed biology, economics, hydrogeology, physics, statistics, and toxicology are misused in ways that make life-and-death differences for humans. It thus analyzes science at the heart of contemporary controversies - from cell phones, climate change, and contraceptives, to plastic food containers and radioactive waste facilities. It illustrates how to evaluate these scientific findings, instead of merely describing what they are. Practical evaluation of science is important because, at least in the United States, 75 percent of all science is funded by special interests, to achieve specific practical goals, such as developing pharmaceuticals or showing some pollutant causes no harm. Of the remaining 25 percent of US science funding, more than half addresses military goals. This means that less than one-eighth of US science funding is for basic science; roughly seven-eighths is done by special interests, for practical projects from which they hope to profit. The problem, however, is that often this flawed, special-interest science harms the public.

Comment: Recommended for students in philosophy of science, environmental ethics or science policy. Could serve as an introductory reading for practical philosophy of science. It is easy to read and suitable for undergraduate students.

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Smith, Subrena. Organisms as Persisters
2017, Philosophy, Theory, and Practice in Biology 9 (14)

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Added by: Simon Fokt, Contributed by: Ellen Clarke

Abstract: This paper addresses the question of what organisms are and therefore what kinds of biological entities qualify as organisms. For some time now, the concept of organismality has been eclipsed by the notion of individuality. Biological individuals are those systems that are units of selection. I develop a conception of organismality that does not rely on evolutionary considerations, but instead draws on development and ecology. On this account, organismality and individuality can come apart. Organisms, in my view, are as Godfrey-Smith puts it “essentially persisters.” I argue that persistence is underpinned by differentiation, integration, development, and the constitutive embeddedness of organisms in their worlds. I examine two marginal cases, the Portuguese Man O’ War and the honey bee colony, and show that both count as organisms in light of my analysis. Next, I examine the case of holobionts, hosts plus their microsymbionts, and argue that they can be counted as organisms even though they may not be biological individuals. Finally, I consider the question of whether other, less tightly integrated biological systems might also be treated as organisms.

Comment: This paper is ideal for teaching the problem of biological individuality, in a philosophy of biology course

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